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Chin. Phys. B, 2021, Vol. 30(11): 118704    DOI: 10.1088/1674-1056/ac0ee7
INTERDISCIPLINARY PHYSICS AND RELATED AREAS OF SCIENCE AND TECHNOLOGY Prev   Next  

Viewing the noise propagation mechanism in a unidirectional transition cascade from the perspective of stability

Qi-Ming Pei(裴启明), Bin-Qian Zhou(周彬倩), Yi-Fan Zhou(周祎凡), Charles Omotomide Apata, and Long Jiang(蒋龙)
School of Physics and Optoelectronic Engineering, Yangtze University, Jingzhou 434023, China
Abstract  Noise and noise propagation are inevitable and play a constructive role in various biological processes. The stability of cell homeostasis is also a critical issue. In the unidirectional transition cascade of colon cells, stem cells (SCs) are the source. They differentiate into transit-amplifying cells (TACs), and TACs differentiate into fully differentiated cells (FDCs). Two differentiation processes are irreversible. The stability factor is introduced so that the noise propagation mechanism from the perspective of stability is studied according to the noise propagation formulas. It is found that the value of the stability factor corresponding to the minimum noise in FDCs may be the best choice to enable colon cells to maintain high stability and low noise of the cascade. Moreover, for the source cell, the total noise only includes intrinsic noise; for the downstream cell with self-proliferation capability, the total noise mainly depends on its intrinsic noise and transmitted noise from upstream cells, and its intrinsic noise is dominant. For the downstream cell without self-proliferation capability, the total noise is mainly determined by transmitted noises from upstream cells, and there is a minimum value. This work provides a new approach for studying the mechanism of noise propagation while considering the stability of cell homeostasis in biological systems.
Keywords:  noise      noise propagation      stability      linear approximation  
Received:  15 April 2021      Revised:  25 May 2021      Accepted manuscript online:  28 June 2021
PACS:  87.18.Tt (Noise in biological systems)  
  05.45.-a (Nonlinear dynamics and chaos)  
  05.10.Gg (Stochastic analysis methods)  
  02.50.-r (Probability theory, stochastic processes, and statistics)  
Fund: Project supported by the National Natural Science Foundation of China (Grant No. 11605014).
Corresponding Authors:  Qi-Ming Pei, Long Jiang     E-mail:  qmpei@yangtzeu.edu.cn;jianglong@yangtzeu.edu.cn

Cite this article: 

Qi-Ming Pei(裴启明), Bin-Qian Zhou(周彬倩), Yi-Fan Zhou(周祎凡), Charles Omotomide Apata, and Long Jiang(蒋龙) Viewing the noise propagation mechanism in a unidirectional transition cascade from the perspective of stability 2021 Chin. Phys. B 30 118704

[1] Gui R, Li Z H, Hu L J, Cheng G H, Liu Q, Xiong J, Jia Y and Yi M 2018 Chin. Phys. B 27 028706
[2] Hilfinger A, Norman T M and Paulsson J 2016 Cell Syst. 2 251
[3] Tsimring L S 2014 Rep. Prog. Phys. 77 026601
[4] Raj A and van Oudenaarden A 2008 Cell 135 216
[5] Eldar A and Elowitz M B 2010 Nature 467 167
[6] Zhang N, Zhang H, Liu Z, Ding X, Yang M, Gu H and Ren W 2009 Chin. Phys. Lett. 26 110501
[7] Li Y, Zhang H, Wei C, Yang M, Gu H and Ren W 2009 Chin. Phys. Lett. 26 030504
[8] Ge M, Lu L, Xu Y, Mamatimin R, Pei Q and Jia Y 2020 Chaos Soliton. Fract. 133 109645
[9] Liu Y, Ma J, Xu Y and Jia Y 2019 Int. J. Bifurcat. Chaos 29 1950156
[10] Xu Y, Jia Y, Wang H, Liu Y, Wang P and Zhao Y 2019 Nonlinear Dynam. 95 3237
[11] Cheng G, Gui R, Yao Y and Yi M 2019 Physica A 520 361
[12] Xu Y, Liu M, Zhu Z and Ma J 2020 Chin. Phys. B. 29 098704
[13] Yu H, Meng Z, Liu C, Wang J and Liu J 2021 Chin. Phys. B 30 038703
[14] Zhang Y, Zhou P, Yao Z and Ma J 2021 Pramana J. Phys. 95 49
[15] Ma J, Xu W, Zhou P and Zhang G 2019 Physica A 536 122598
[16] Liu Y, Xu Y and Ma J 2020 Commun. Nonlinear. Sci. Numer. Simulat. 89 105297
[17] Wu F, Ma J and Ren G 2018 J. Zhejiang Univ. Sci. A 19 889
[18] Zhang J, Yuan Z and Zhou T 2009 Phys. Biol. 6 046009
[19] Wang Z and Zhang J 2011 Proc. Natl. Acad. Sci. USA 108 E67
[20] Pedraza J M and van Oudenaarden A 2005 Science 307 1965
[21] Baraskar A A, Deb A and Viswanathan G A 2013 IFAC Proc. Vol. 46 89
[22] Kleijn I T, Krah L H J and Hermsen R 2018 PLoS Comput. Biol. 14 e1006386
[23] Pei Q M, Zhan X, Yang L J, Shen J, Wang L F, Qiu K, Liu T, Kirunda J B, Yousif A A M, Li A B and Jia Y 2015 Phys. Rev. E 92 012721
[24] Hou X F, Zhou B Q, Zhou Y F, Apata C O, Jiang L and Pei Q M 2020 Phys. Rev. E 102 062411
[25] Boukal Y, Zasadzinski M, Darouach M and Radhy N E 2018 Mathematical Techniques of Fractional Order Systems (Advances in Nonlinear Dynamics and Chaos (ANDC)) (Netherlands: Elsevier) pp. 133-158
[26] Chicone C 2012 Mathematics of Complexity and Dynamical Systems (New York: Springer) pp. 1653-1671
[27] Niu L, Chen Y, Shen X and Xu T 2020 Chin. Phys. B 29 087803
[28] Ai D, Qiao H, Zhang S, Luo L, Sun C, Zhang S, Peng C, Qi Q, Jin T, Zhou M and Xu X 2020 Chin. Phys. B 29 090601
[29] Noor N A, Mushahid N, Khan A, Kattan N A, Mahmood A and Ramay S M 2020 Chin. Phys. B 29 097101
[30] Guo H, Cheng T and Li Y 2020 Chin. Phys. B 29 115202
[31] Song X, Li B and Xie L 2020 Chin. Phys. B 29 086201
[32] Liu H, Li S, Wang H and Li G 2017 Chin. Phys. B 26 030504
[33] Zhu L and Wang B 2020 Inform. Sciences 526 1
[34] Annas S, Pratama M I, Rifandi M, Sanusi W and Side S 2020 Chaos Soliton. Fract. 139 110072
[35] Boukhouima A, Lotfi E M, Mahrouf M, Rosa S, Torres D and Yousfi N 2021 Eur. Phys. J. Plus 136 103
[36] Allali K 2021 Biosystems 199 104321
[37] Johnston M D, Edwards C M, Bodmer W F, Maini P K and Chapman S J 2007 Proc. Natl. Acad. Sci. USA 104 4008
[38] Pei Q, Zhan X, Yang L, Bao C, Cao W, Li A, Rozi A and Jia Y 2014 Phys. Rev. E 89 032715
[39] Tang N, Yang X Y, Song L, Zhang J, Li X L, Zhou Z K and Shi Y R 2020 Acta Phys. Sin. 69 010301 (in Chinese)
[40] Duan L, Liu C, Zhao L C and Yang Z Y 2020 Acta Phys. Sin. 69 010501 (in Chinese)
[41] Wang W, Deguchi Y, He Y S and Zhang J Z 2019 Acta Phys. Sin. 68 234303 (in Chinese)
[42] Kim K H, Hong Q and Sauro H M 2013 J. Chem. Phys. 139 144108
[43] Pedraza J M and van Oudenaarden A 2005 Science 307 1965
[44] Paulsson J 2004 Nature 427 415
[45] Gillespie D T 1977 J. Phys. Chem. 81 2340
[46] Ni M, Wang S and Ouyang Q 2008 Chin. Phys. Lett. 25 2702
[47] Oyarzún D A, Lugagne J and Stan G V 2015 ACS Synth. Biol. 4 116
[48] Brett T and Galla T 2013 Phys. Rev. Lett. 110 250601
[49] VanKampen N G 2010 Stochastic Processes in Physics and Chemistry 3rd edn. (Beijing: World Book Publishing Company Beijing Company) pp. 219-240
[50] Xiong L, Ma Y and Tang L 2010 Chin. Phys. Lett. 27 098701
[51] Zhou B, Apata C O, Zhou Y, Jiang L and Pei Q 2022 Physica A 585 126429
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