Extended triplet set C343 of DNA sequences and its application to the p53 gene

doi:10.1088/1674-1056/20/1/018701

Abstract Recently, much research has indicated that more and more cancers pose a threat to human life. Cancers are caused by oncogenes. Many human oncogenes have been found and most of them are located on chromosomes. The discovery of the oncogene plays a significant role in the treatment of cancer. The p53 tumor suppressor gene has received much attention because it frequently mutates or deletes in tumor cells of most people. Thus, the study of oncogenes is significant. In order to establish the Galois field (GF(7)), the indefinite gene is introduced as D and oncogene is introduced as O, and P. Taking the polynomial coefficients a₀, a₁, a₂ ∈ GF(7) and the bijective function f:GF(7) → {D,A,C,O,G,T,P}, where f(0) = D, f(1) = A, f(2) = C, f(3) = O, f(4) = G, f(5) = T, and f(6) = P, the bijective φ may be written as φ(a₀ + a₁x + a₂x²). Based on the algebraic structure, we can not only analyse the DNA sequence of oncogenes, but also predict possible new cancers.

Keywords: oncogene gene encoding algebraic polynomial p53

Received: 16 May 2010
Revised: 09 August 2010
Accepted manuscript online:

PACS:	87.15.B-	(Structure of biomolecules)
	02.10.Dc

Fund: Project supported in part by the Program for Innovative Research Team of Jiangnan University, China (Grant No. 2008 CX002).

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Yan Yan-Yan(闫艳艳) and Zhu Ping(朱平) Extended triplet set C₃₄₃ of DNA sequences and its application to the p53 gene 2011 Chin. Phys. B 20 018701

[1]	Sánchez R, Perfetti L A, Grau R and Morgado E 2005 MATCH Commun. Math. Comput. Chem. 54 3
[2]	Sánchez R and Grau R 2009 Math. Biosci. 221 60
[3]	Sánchez R, Grau R and Morgado E 2006 Math. Biosci. 202 156
[4]	Hornos J E and Hornos Y M 2006 Phys. Rev. Lett. 71 4401
[5]	Sánchez R and Grau R 2006 Acta Biotheor. 54 27
[6]	Sánchez R, Morgado E and Grau R 2005 J. Math. Biol. 51 431
[7]	Sánchez R, Morgado E and Grau R 2004 MATCH Commun. Math. Comput. Chem. 52 29
[8]	Zhu P, Tang X Q and Xu Z Y 2009 Chin. Phys. B 18 363
[9]	Tang X Q, Zhu P and Cheng J X 2010 Pattern Recognition 43 3768
[10]	Zhu P, Gao L and Xu Z Y 2009 Acta Phys. Sin. 58 4295 (in Chinese)
[11]	Liu Q, Tang C and Ou Y Q 2010 Chin. Phys. B 19 040202
[12]	Wang Q H, Zhang Y Y, Lai J C, Li Z H and He A Z 2007 Acta Phys. Sin. 56 1203 (in Chinese)
[13]	Liu X F and Wang Y 2009 Chin. Phys. B 18 2690
[14]	Bashford J D and Jarvis P D 2000 Biosystems 57 147
[15]	Jako E, Ari E, Ittzes P, Horvath A and Podani J 2009 Molecular Phylogenetics and Evolution 52 887
[16]	José M V, Morgado Ey R and Govezensky T 2005 Bull. Math. Biol. 67 1
[17]	Piccirilli J A., Krauch T, Moroney S E and Beener S A 1990 Nature 343 33
[18]	Switzer C Y, Moroney S E and Beener S A 1989 J. Am. Chem. Soc. 111 8322
[19]	Jiang P Z, Shen X M and Huang H 2001Volumes of International Oncology 28 89 (in Chinese)
[20]	Isobe M, Emanuel B S, Givol D, Oren M and Croce C M 1986 Nature 6057 84
[21]	Matlashewski G, Lamb P, Pim D, Peacock J, Crawford L and Benchimol S 1984 Embo. J. 13 3257
[22]	http://en.wikipedia.org/wiki/P53#Additional_images 2010
[23]	Redei L 1967 Algebra Budapest: Akademiai Kiado vol.1
[24]	http://mathworld.wolfram.com/PrimitivePolynomial.html 2010
[25]	http://wims.unice.fr/wims/wims.cgi?session= JM7F6CF054. 2&+lang=cn&+module=tool%2Falgebra%2Fprimpoly.cn &+cmd=reply&+job=menu 2007
[26]	Kupryjanczyk J, Bell D A, Dimeo D, Beauchamp R, Thor A D and Yandell D W 1993 Medical Sciences 99 4961
[27]	Hollstein M C, Metcalf R A and Welsh J A 1990 Medical Sciences 87 9958
[28]	Biramijamal F 2005 Journal of Sciences 16 3
[29]	Yoshimasa M, Masahiro Y, Chiho O ,Mayumi I, Kauzue K, Makiko K and Yutaka O 2001 Chest 20 589
[30]	Leroy K, Haioun C and Lepage E 2002 Annals of Oncology 13 1108
[31]	http://p53.bii.a-star.edu.sg/aboutp53/dnaseq 2005
[32]	http://www.medterms.com/script/main/art. asp?articlekey=4396 2010 endfootnotesize

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Extended triplet set C343 of DNA sequences and its application to the p53 gene

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Extended triplet set C₃₄₃ of DNA sequences and its application to the p53 gene