Predicting the subcellular location of apoptosis proteins based on recurrence quantification analysis and the Hilbert–Huang transform

doi:10.1088/1674-1056/20/10/100504

Abstract Apoptosis proteins play an important role in the development and homeostasis of an organism. The elucidation of the subcellular locations and functions of these proteins is helpful for understanding the mechanism of programmed cell death. In this paper, the recurrent quantification analysis, Hilbert-Huang transform methods, the maximum relevance and minimum redundancy method and support vector machine are used to predict the subcellular location of apoptosis proteins. The validation of the jackknife test suggests that the proposed method can improve the prediction accuracy of the subcellular location of apoptosis proteins and its application may be promising in other fields.

Keywords: apoptosis proteins subcellular location recurrent quantification analysis Hilbert-Huang transform

Received: 02 June 2011
Revised: 15 June 2011
Accepted manuscript online:

PACS:	05.45.Df	(Fractals)
	64.60.al	(Fractal and multifractal systems)
	87.15.Qt	(Sequence analysis)

Fund: Project supported by the National Natural Science Foundation of China (Grant No. 11071282), the Chinese Program for New Century Excellent Talents in University (Grant No. NCET-08-06867), the Natural Science Foundation of Hunan Province of China (Grant No. 10JJ7001), the Lotus Scholars Program of Hunan Province of China, the Aid Program for Science and Technology Innovative Research Team in Higher Educational Institutions of Hunan Province of China, the Australian Research Council (Grant No. DP0559807), and the Postgraduate Research and Innovation Project of Hunan Province of China (Grant No. CX2010B243).

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Han Guo-Sheng(韩国胜), Yu Zu-Guo(喻祖国), and Anh Vo Predicting the subcellular location of apoptosis proteins based on recurrence quantification analysis and the Hilbert–Huang transform 2011 Chin. Phys. B 20 100504

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Predicting the subcellular location of apoptosis proteins based on recurrence quantification analysis and the Hilbert–Huang transform

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