Breathers and solitons for the coupled nonlinear Schrödinger system in three-spine α-helical protein
Xiao-Min Wang(王晓敏)1,2,† and Peng-Fei Li(李鹏飞)1,2
1 Department of Physics, Taiyuan Normal University, Jinzhong 030619, China; 2 Institute of Computational and Applied Physics, Taiyuan Normal University, Jinzhong 030619, China
Abstract We mainly investigate the variable-coefficient 3-coupled nonlinear Schrödinger (NLS) system, which describes soliton dynamics in the three-spine α-helical protein with inhomogeneous effect. The variable-coefficient NLS equation is transformed into the constant coefficient NLS equation by similarity transformation firstly. The Hirota method is used to solve the constant coefficient NLS equation, and then we get the one- and two-breather solutions of the variable-coefficient NLS equation. The results show that, in the background of plane waves and periodic waves, the breather can be transformed into some forms of combined soliton solutions. The influence of different parameters on the soliton solution and the collision between two solitons are discussed by some graphs in detail. Our results are helpful to study the soliton dynamics in α-helical protein.
Fund: Project supported by the Scientific and Technological Innovation Programs of Higher Education Institution in Shanxi, China (Grant Nos. 2020L0525 and 2019L0782), the National Natural Science Foundation of China (Grant Nos. 11805141 and 12075210), Applied Basic Research Program of Shanxi Province, China (Grant No. 201901D211424), “1331 Project” Key Innovative Research Team of Taiyuan Normal University (Grant No. I0190364), and Key Research and Development program of Shanxi Province, China (Grant No. 201903D421042).
Corresponding Authors:
Xiao-Min Wang
E-mail: wangxiaomin086@163.com
Cite this article:
Xiao-Min Wang(王晓敏) and Peng-Fei Li(李鹏飞) Breathers and solitons for the coupled nonlinear Schrödinger system in three-spine α-helical protein 2021 Chin. Phys. B 30 100509
[1] Li B, Zhang X F, Li Y Q and Liu W M 2011 Phys. B44 175301 [2] Xu T, Chen Y, Li M and Meng D X 2019 Chaos29 123124 [3] Meng D X, Hu M Y and Xu T 2021 Eur. J. Phys.42 015301 [4] Zhang D J 2002 J. Phys. Soc. Jpn.71 11 [5] Li M, Wang B, Xu T and Wang L 2021 Chaos Soliton. Fract.145 110767 [6] Guo H, Wang Y J, Wang L X and Zhang X F 2020 Acta Phys. Sin.69 010302 (in Chinese) [7] Tang N, Yang X Y, Song L, Zhang J, Li X L, Zhou Z K and Shi Y R 2020 Acta Phys. Sin.69 010301 (in Chinese) [8] Li Y E and Xue J K 2016 Chin. Phys. Lett.33 100502 [9] Radhakrishnan R, Lakshmanan M and Hietarinta J 1997 Phys. Rev. E56 2213 [10] Guo R, Liu Y F, Hao H Q and Qi F H 2015 Nonl. Dyn.80 1221 [11] Turin L 2009 J. Biol. Phys.35 9 [12] Davydov A S 1973 J. Theor. Biol.38 559 [13] Ondoua R Y, Tabi C B, Ekobena H P, Mohamadou A and Kofané T C 2012 Eur. Phys. J. B85 318 [14] Daniel M and Latha M M 2001 Phys. A298 351 [15] Daniel M and Latha M M 1997 Phys. A240 526 [16] L Brizhik, Eremko A, Piette B and Zakrzewski W 2006 Chem. Phys.324 259 [17] Tsivlin D V and May V 2007 Chem. Phys.338 150 [18] Cruzeiro L 2009 J. Biol. Phys.35 43 [19] Simo E 2009 Phys. Scr.80 045801 [20] Zhao Q and Markus J B 2010 Phys. Rev. Lett.104 198304 [21] Biswas A, Moran A, Milovic D, Majid F and Biswas K C 2010 Math. Biol. Sci.227 68 [22] Daniel M and Latha M M 1999 Phys. Lett. A252 92 [23] Daniel M and Latha M M 2002 Phys. Lett. A302 94 [24] Latha M M and Veni S S 2011 Phys. Scr.83 035001 [25] Veni S S and Latha M M 2012 Phys. Scr.86 025003 [26] Li M M, Hu C L, Wu J, lai X J and Wang Y Y 2019 Chin. Phys. B28 120502 [27] Sun W R, Tian B, Wang Y F and Zhen H L 2015 Eur. Phys. J. D69 1 [28] Petrović N and Zahreddine H 2012 Phys. Scr. TT149 014039 [29] Kong L Q, Liu J, Jin D Q, Ding D J and Dai C Q 2017 Nonlinear Dynam.87 83 [30] Li Q Y, Wang S J and Li Z D 2014 Chin. Phys. B23 060310 [31] Abdullaev F K, Kamchatnov A M, Konotop V V and Brazhnyi V A 2003 Phys. Rev. Lett.90 230402 [32] Qin B, Tian B, Liu W J, Liu L C, Qu Q X and Zhang H Q 2011 SIAM J. Appl. Math.71 1317 [33] Zhang L L and Wang X M 2020 Mod. Phys. Lett. B34 2050064 [34] Liu C, Yang W L and Akhmediev N 2019 J. Opt. Soc. Am. B36 1294 [35] Liu W J, Yang C Y, Liu M L, Yu W T, Zhang Y J and Lei M 2017 Phys. Rev. E96 042201 [36] Liu C, Yang Z Y and Yang W L 2018 Chaos28 083110 [37] Wang N 2012 Chin. Phys. B21 010202 [38] Xu T, Zhang G, Wang L, Xu and Li M 2021 Commun. Theor. Phys.73 025005 [39] Ren Y, Wang X, Liu C, Yang Z Y and Yang W L 2018 Commun. Nonlinear Sci. Num. Simul.63 161
Altmetric calculates a score based on the online attention an article receives. Each coloured thread in the circle represents a different type of online attention. The number in the centre is the Altmetric score. Social media and mainstream news media are the main sources that calculate the score. Reference managers such as Mendeley are also tracked but do not contribute to the score. Older articles often score higher because they have had more time to get noticed. To account for this, Altmetric has included the context data for other articles of a similar age.