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Special Issue:
TOPICAL REVIEW — Electron microscopy methods for emergent materials and life sciences
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| TOPICAL REVIEW—Electron microscopy methods for the emergent materials and life sciences |
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Computing methods for icosahedral and symmetry-mismatch reconstruction of viruses by cryo-electron microscopy |
| Bin Zhu(朱彬)1, Lingpeng Cheng(程凌鹏)2, Hongrong Liu(刘红荣)1 |
1 College of Physics and Information Science, Synergetic Innovation Center for Quantum Effects and Applications and Key Laboratory of Low-dimensional Quantum Structures, Hunan Normal University, Changsha 410081, China;
2 Technology Center for Protein Sciences, School of Life Sciences, Tsinghua University, Beijing 100084, China |
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Abstract Three-dimensional (3D) reconstruction of icosahedral viruses has played a crucial role in the development of cryo-electron microscopy single-particle reconstruction, with many cryo-electron microscopy techniques first established for structural studies of icosahedral viruses, owing to their high symmetry and large mass. This review summarizes the computational methods for icosahedral and symmetry-mismatch reconstruction of viruses, as well as the likely challenges and bottlenecks in virus reconstruction, such as symmetry mismatch reconstruction, contrast transformation function (CTF) correction, and particle distortion.
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Received: 21 November 2017
Revised: 27 March 2018
Accepted manuscript online:
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PACS:
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68.37.Lp
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(Transmission electron microscopy (TEM))
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68.37.Og
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(High-resolution transmission electron microscopy (HRTEM))
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02.20.-a
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(Group theory)
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| Fund: Project supported by the National Key R&D Program of China (Grant No.2016YFA0501100),the National Natural Science Foundation of China (Grant Nos.91530321,31570742,and 31570727),and Science and Technology Planning Project of Hunan Province,China (Grant No.2017RS3033). |
Corresponding Authors:
Lingpeng Cheng, Hongrong Liu
E-mail: lingpengcheng@mail.tsinghua.edu.cn;hrliu@hunnu.edu.cn
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Cite this article:
Bin Zhu(朱彬), Lingpeng Cheng(程凌鹏), Hongrong Liu(刘红荣) Computing methods for icosahedral and symmetry-mismatch reconstruction of viruses by cryo-electron microscopy 2018 Chin. Phys. B 27 056802
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