Theoretical studies on sRNA-mediated regulation in bacteria

doi:10.1088/1674-1056/24/12/128703

中国物理B ›› 2015, Vol. 24 ›› Issue (12): 128703-128703.doi: 10.1088/1674-1056/24/12/128703

所属专题： TOPICAL REVIEW — 8th IUPAP International Conference on Biological Physics

• TOPICAL REVIEW—8th IUPAP International Conference on Biological Physics • 上一篇下一篇

Theoretical studies on sRNA-mediated regulation in bacteria

常晓雪^b, 徐留芳^{a b}, 史华林^b

a Department of Physics and Theoretical Physics Center, Jilin University, Changchun 130012, China;
b State Key Laboratory of Theoretical Physics, Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 100190, China

收稿日期:2015-05-04 修回日期:2015-08-27 出版日期:2015-12-05 发布日期:2015-12-05
通讯作者: Xu Liu-Fang, Shi Hua-Lin E-mail:lfxuphy@jlu.edu.cn;shihl@itp.ac.cn
基金资助:
Project supported by the National Basic Research Program of China (Grant No. 2013CB834100), the National Natural Science Foundation of China (Grant Nos. 11121403 and 11274320), the Open Project Program of State Key Laboratory of Theoretical Physics, Institute of Theoretical Physics, Chinese Academy of Sciences, China (Grant No. Y4KF171CJ1), the National Natural Science Foundation for Young Scholar of China (Grant No. 11304115), and the China Postdoctoral Science Foundation (Grant No. 2013M541282).

Theoretical studies on sRNA-mediated regulation in bacteria

Chang Xiao-Xue (常晓雪)^b, Xu Liu-Fang (徐留芳)^{a b}, Shi Hua-Lin (史华林)^b

a Department of Physics and Theoretical Physics Center, Jilin University, Changchun 130012, China;
b State Key Laboratory of Theoretical Physics, Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 100190, China

Received:2015-05-04 Revised:2015-08-27 Online:2015-12-05 Published:2015-12-05
Contact: Xu Liu-Fang, Shi Hua-Lin E-mail:lfxuphy@jlu.edu.cn;shihl@itp.ac.cn
Supported by:
Project supported by the National Basic Research Program of China (Grant No. 2013CB834100), the National Natural Science Foundation of China (Grant Nos. 11121403 and 11274320), the Open Project Program of State Key Laboratory of Theoretical Physics, Institute of Theoretical Physics, Chinese Academy of Sciences, China (Grant No. Y4KF171CJ1), the National Natural Science Foundation for Young Scholar of China (Grant No. 11304115), and the China Postdoctoral Science Foundation (Grant No. 2013M541282).

摘要/Abstract

摘要：

Small RNA(sRNA)-mediated post-transcriptional regulation differs from protein-mediated regulation. Through base-pairing, sRNA can regulate the target mRNA in a catalytic or stoichiometric manner. Some theoretical models were built for comparison of the protein-mediated and sRNA-mediated modes in the steady-state behaviors and noise properties. Many experiments demonstrated that a single sRNA can regulate several mRNAs, which causes crosstalk between the targets. Here, we focus on some models in which two target mRNAs are silenced by the same sRNA to discuss their crosstalk features. Additionally, the sequence-function relationship of sRNA and its role in the kinetic process of base-pairing have been highlighted in model building.

关键词: sRNA-mediated regulation, kinetic model, crosstalk

Abstract:

Key words: sRNA-mediated regulation, kinetic model, crosstalk

中图分类号: (RNA)

87.14.gn

87.15.A- (Theory, modeling, and computer simulation) 87.16.Yc (Regulatory genetic and chemical networks)

常晓雪, 徐留芳, 史华林. Theoretical studies on sRNA-mediated regulation in bacteria[J]. 中国物理B, 2015, 24(12): 128703-128703.

Chang Xiao-Xue (常晓雪), Xu Liu-Fang (徐留芳), Shi Hua-Lin (史华林). Theoretical studies on sRNA-mediated regulation in bacteria[J]. Chin. Phys. B, 2015, 24(12): 128703-128703.

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Theoretical studies on sRNA-mediated regulation in bacteria

Theoretical studies on sRNA-mediated regulation in bacteria

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