X-ray absorption near-edge structure study on the configuration of Cu2+/histidine complexes at different pH values

doi:10.1088/1674-1056/25/4/048701

中国物理B ›› 2016, Vol. 25 ›› Issue (4): 48701-048701.doi: 10.1088/1674-1056/25/4/048701

• INTERDISCIPLINARY PHYSICS AND RELATED AREAS OF SCIENCE AND TECHNOLOGY • 上一篇下一篇

X-ray absorption near-edge structure study on the configuration of Cu²⁺/histidine complexes at different pH values

Mei-Juan Yu(于梅娟), Yu Wang(王宇), Wei Xu(徐伟)

1 Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China;
2 Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201204, China

收稿日期:2015-11-13 修回日期:2015-12-14 出版日期:2016-04-05 发布日期:2016-04-05
通讯作者: Mei-Juan Yu E-mail:yumj@ihep.ac.cn
基金资助:
Project supported by the National Natural Science Foundation of China (Grant No. 11205186).

X-ray absorption near-edge structure study on the configuration of Cu²⁺/histidine complexes at different pH values

Mei-Juan Yu(于梅娟)¹, Yu Wang(王宇)², Wei Xu(徐伟)¹

1 Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China;
2 Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201204, China

Received:2015-11-13 Revised:2015-12-14 Online:2016-04-05 Published:2016-04-05
Contact: Mei-Juan Yu E-mail:yumj@ihep.ac.cn
Supported by:
Project supported by the National Natural Science Foundation of China (Grant No. 11205186).

摘要/Abstract

摘要： The local configurations around metal ions in metalloproteins are of great significance for understanding their biological functions. Cu²⁺/histidine (His) is a typical complex existing in many metalloproteins and plays an important role in lots of physiological functions. The three-dimensional (3D) structural configurations of Cu²⁺/His complexes at different pH values (2.5, 6.5, and 8.5) are quantitatively determined by x-ray absorption near-edge structure (XANES). Generally Cu²⁺/His complex keeps an octahedral configuration consisting of oxygen atoms from water molecules and oxygen or nitrogen atoms from histidine molecules coordinated around Cu²⁺. It is proved in this work that the oxygen atoms from water molecules, when increasing the pH value from acid to basic value, are gradually substituted by the O_carboxyl, N_am, and N_im from hisitidine molecules. Furthermore, the symmetries of Cu²⁺/His complexes at pH 6.5 and pH 8.5 are found to be lower than at pH 2.5.

关键词: x-ray absorption near-edge structure, Cu²⁺/His, pH values, configuration

Abstract: The local configurations around metal ions in metalloproteins are of great significance for understanding their biological functions. Cu²⁺/histidine (His) is a typical complex existing in many metalloproteins and plays an important role in lots of physiological functions. The three-dimensional (3D) structural configurations of Cu²⁺/His complexes at different pH values (2.5, 6.5, and 8.5) are quantitatively determined by x-ray absorption near-edge structure (XANES). Generally Cu²⁺/His complex keeps an octahedral configuration consisting of oxygen atoms from water molecules and oxygen or nitrogen atoms from histidine molecules coordinated around Cu²⁺. It is proved in this work that the oxygen atoms from water molecules, when increasing the pH value from acid to basic value, are gradually substituted by the O_carboxyl, N_am, and N_im from hisitidine molecules. Furthermore, the symmetries of Cu²⁺/His complexes at pH 6.5 and pH 8.5 are found to be lower than at pH 2.5.

Key words: x-ray absorption near-edge structure, Cu²⁺/His, pH values, configuration

中图分类号: (X-ray and EXAFS)

87.64.kd

61.05.cj (X-ray absorption spectroscopy: EXAFS, NEXAFS, XANES, etc.)

于梅娟, 王宇, 徐伟. X-ray absorption near-edge structure study on the configuration of Cu²⁺/histidine complexes at different pH values[J]. 中国物理B, 2016, 25(4): 48701-048701.

Mei-Juan Yu(于梅娟), Yu Wang(王宇), Wei Xu(徐伟). X-ray absorption near-edge structure study on the configuration of Cu²⁺/histidine complexes at different pH values[J]. Chin. Phys. B, 2016, 25(4): 48701-048701.

参考文献 25

[1]	da Silva J J R Fraùsto and Williams R J P 2001 The biological chemistry of the elements: The inorganic chemistry of life, 2nd edn. (Oxford: Oxford University Press), ISBN: 9780198508489
[2]	Lavanant H, Hecquet E and Hoppilliard Y 1999 Int. J. Mass Spectrom. 185/186/187 11
[3]	Nicolis I, Deschamps P, Curis E, Corriol O, Acar V, Zerrouk N, Chaumeil J C, Guyon F and Bénazeth S 2001 J. Synchrotron Rad. 8 984
[4]	Tumer Z, Horn N, Tonnesen T, Christodoulou J, Clarke J T and Sarkar B 1996 Nat. Genet. 12 11
[5]	Sarkar B, Lingertat-Walsh K and Clarke J T 1993 J. Pediatr. 123 828
[6]	Sarkar B 1997 Ann. Neurol. 41 134
[7]	Sarkar B and Kruck T P A 1966 The Biochemistry of Copper, eds. Peisach J, Aisen P and Blumberg W E (New York: Academic Press) p. 183
[8]	Deschamps P, Kulkarni P P, Gautam-Basak M and Sarkar B 2005 Coord. Chem. Rev. 249 895
[9]	Zheng L and Wu X S 2013 Chin. Phys. B 22 107806
[10]	Yan W S, Li Z R, Sun Z H, Pan Z Y and Wei S Q 2007 Chin. Phys. 16 2764
[11]	Liu T, Hu T D, Xie Y N, Jiang H Y, Wang D W, Wang W D and Li H B 1998 Chin. Phys. 7 541
[12]	Hu X J, Wu Q L, Ji Y, Man Y J, Yu K, Ling G, Yang G B, Wang R and Xie Y N 1996 Chin. Phys. 5 10
[13]	Cui P X, Wang Y, Chu W S, Guo X Y, Yang F F, Yu M J, Zhao H F, Dong Y H, Xie Y N, Gong W M and Wu Z Y 2014 Sci. Rep. -UK 4 7453
[14]	Yu M J, Chu W S and Wu Z Y 2010 Nucl. Instrum. Method A: Accelerators, Spectrometers, Detectors and Associated Equipment 619 408
[15]	Yu M J, Yang F F, Chu W S, Wang Y, Zhao H F, Gao B, Zhao W, Sun J P, Wu F M, Zhang X W, Shi Y Y and Wu Z Y 2008 Biochem. Bioph. Res. Co. 374 28
[16]	Benfatto M and Della Longa S 2001 J. Synchrotron Rad. 8 1087
[17]	Benfatto M, Congiu-Castellano A, Daniele A and Della Longa S 2001 J. Synchrotron Rad. 8 267
[18]	Natoli C R and Benfatto M 1986 J. Phys. (Paris) Colloq. 47(C8) 11
[19]	Wu Z Y, Ouvrard G, Lemaux S, Moreau P, Gressier P, Lemoigno F and Rouxel J 1996 Phys. Rev. Lett. 77 2101
[20]	Della Longa S, Arcovito A, Girasole M, Hazemann J L and Benfatto M 2001 Phys. Rev. Lett. 87 155501
[21]	Benfatto M and Wu Z Y 2003 Nucl. Sci. Technol. 14 9
[22]	Benfatto M, Della Longa S, Qin Y, Li Q, Pan G, Wu Z and Morant S 2004 Biophys. Chem. 110 191
[23]	Benfatto M, D'Angelo P, Della Longa S and Pavel N V 2002 Phys. Rev. B 65 174205
[24]	Benfatto M, Della Longa S and Natoli C R 2003 J. Synchrotron Rad. 10 51
[25]	Ressler T 1998 J. Synchrotron Rad. 5 118

X-ray absorption near-edge structure study on the configuration of Cu²⁺/histidine complexes at different pH values

X-ray absorption near-edge structure study on the configuration of Cu²⁺/histidine complexes at different pH values

RichHTML

PDF (PC)

赞

可视化

摘要/Abstract

引用本文

使用本文

参考文献 25

相关文章 15

Metrics

本文评价

推荐阅读 0

[1]	Wei Hu(胡伟), Wen-Wei Luo(罗文崴), Mu-Sheng Wu(吴木生), Bo Xu(徐波), and Chu-Ying Ouyang(欧阳楚英). Configurational entropy-induced phase transition in spinel LiMn₂O₄[J]. 中国物理B, 2022, 31(9): 98202-098202.
[2]	卢肖勇, 袁程, 张小章, 张志忠. Hybrid-PIC/PIC simulations on ion extraction by electric field in laser-induced plasma[J]. 中国物理B, 2020, 29(4): 45201-045201.
[3]	丁晓彬, 吴存强, 曹铭欣, 张登红, 张明武, 薛迎利, 于得洋, 董晨钟. Effects of electron correlation and the Breit interaction on one- and two-electron one-photon transitions in double K hole states of He-like ions (10≤Z≤47)[J]. 中国物理B, 2020, 29(3): 33101-033101.
[4]	王琦, 殷蔷薇, 雷和畅. Giant topological Hall effect of ferromagnetic kagome metal Fe₃Sn₂[J]. 中国物理B, 2020, 29(1): 17101-017101.
[5]	王巧霞, 王玉敏, 马日, 闫冰. Accurate all-electron calculation on the vibrational and rotational spectra of ground states for O₂ and its ions[J]. 中国物理B, 2019, 28(7): 73101-073101.
[6]	戚竞, 高艺璇, 黄立, 林晓, 董佳家, 杜世萱, 高鸿钧. Real-space observation on standing configurations of phenylacetylene on Cu (111) by scanning probe microscopy[J]. 中国物理B, 2019, 28(6): 66801-066801.
[7]	袁翔, 阴爽, 连艺, 颜培源, 徐海峰, 闫冰. Low-lying electronic states of aluminum monoiodide[J]. 中国物理B, 2019, 28(4): 43101-043101.
[8]	李瑞, 梁桂颖, 林晓贺, 朱宇豪, 赵书涛, 吴勇. Explicitly correlated configuration interaction investigation on low-lying states of SiO⁺ and SiO[J]. 中国物理B, 2019, 28(4): 43102-043102.
[9]	庞昆维, 李海红, 宋钢, 于丽. Strong coupling in silver-molecular J-aggregates-silver structure sandwiched between two dielectric media[J]. 中国物理B, 2019, 28(12): 127301-127301.
[10]	杨阳阳, 张晟, 林平, 万江锋, 杨磊, 丁淑蓉. Influence of wall friction on granular column[J]. 中国物理B, 2019, 28(1): 18104-018104.
[11]	唐志明, 于艳梅, 董晨钟. Determination of static dipole polarizabilities of Yb atom[J]. 中国物理B, 2018, 27(6): 63101-063101.
[12]	胡静, 宋秀能, 王胜雨, 林娟, 张俊荣, 马勇. Landscape of s-triazine molecule on Si(100) by a theoretical x-ray photoelectron spectroscopy and x-ray absorption near-edge structure spectra study[J]. 中国物理B, 2018, 27(11): 113101-113101.
[13]	肖友鹏, 魏秀琴, 周浪. Interface states study of intrinsic amorphous silicon for crystalline silicon surface passivation in HIT solar cell[J]. 中国物理B, 2017, 26(4): 48104-048104.
[14]	邓小川, 陈茜茜, 李诚瞻, 申华军, 张金平. Numerical and experimental study of the mesa configuration in high-voltage 4H-SiC PiN rectifiers[J]. 中国物理B, 2016, 25(8): 87201-087201.
[15]	伞晓娇, 韩柏, 赵景庚. Theoretical investigation of structural and optical properties of semi-fluorinated bilayer graphene[J]. 中国物理B, 2016, 25(3): 37305-037305.