OASIS4.0—a new version of the program OASIS for phasing protein diffraction data

doi:10.1088/1674-1056/19/8/086103

中国物理B ›› 2010, Vol. 19 ›› Issue (8): 86103-086103.doi: 10.1088/1674-1056/19/8/086103

OASIS4.0—a new version of the program OASIS for phasing protein diffraction data

古元新¹, 郑朝德¹, 范海福¹, 张涛²

(1)Beijing National Laboratory for Condensed Matter Physics and Key Laboratory of Soft Matter Physics, Institute of Physics,Chinese Academy of Sciences, Beijing 100190, China; (2)Research Institute of Magnetic Materials, School of Physical Sciences and Technology, Lanzhou University, Lanzhou 730000, China;Beijing National Laboratory for Condensed Matter Physics and Key Laboratory of Soft Matter Physics, Institute of Physics,Chinese Academy of Sciences, Beijing 100190, China

收稿日期:2010-04-21 修回日期:2010-04-29 出版日期:2010-08-15 发布日期:2010-08-15
基金资助:
Project supported by the Innovation Foundation of the Chinese Academy of Sciences, and the National Basic Research Program of China (Grant No. 2002CB713801).

OASIS4.0—a new version of the program OASIS for phasing protein diffraction data

Zhang Tao(张涛)^a)b), Gu Yuan-Xin(古元新)^b)†, Zheng Chao-De(郑朝德)^b), and Fan Hai-Fu(范海福)^b)‡

^a Research Institute of Magnetic Materials, School of Physical Sciences and Technology, Lanzhou University, Lanzhou 730000, China; ^b Beijing National Laboratory for Condensed Matter Physics and Key Laboratory of Soft Matter Physics, Institute of Physics,Chinese Academy of Sciences, Beijing 100190, China

Received:2010-04-21 Revised:2010-04-29 Online:2010-08-15 Published:2010-08-15
Supported by:
Project supported by the Innovation Foundation of the Chinese Academy of Sciences, and the National Basic Research Program of China (Grant No. 2002CB713801).

摘要/Abstract

摘要： The program OASIS4.0 has been released. Apart from the improved single-wavelength anomalous diffraction (SAD) phasing algorithm described in a separate paper, an important new feature in this version is the automation of the iterative phasing and model-building process in solving protein structures. A new graphical user's interface (GUI) is provided for controlling and real-time monitoring the dual-space iterative process. The GUI is discussed in detail in the present paper.

Abstract: The program OASIS4.0 has been released. Apart from the improved single-wavelength anomalous diffraction (SAD) phasing algorithm described in a separate paper, an important new feature in this version is the automation of the iterative phasing and model-building process in solving protein structures. A new graphical user's interface (GUI) is provided for controlling and real-time monitoring the dual-space iterative process. The GUI is discussed in detail in the present paper.

Key words: program OASIS4.0, automatic dual-space fragment extension, proteins

中图分类号: (Scattering of visible, uv, and infrared radiation)

87.64.Cc

07.05.Wr (Computer interfaces) 87.14.E- (Proteins) 87.15.B- (Structure of biomolecules)

张涛, 古元新, 郑朝德, 范海福. OASIS4.0—a new version of the program OASIS for phasing protein diffraction data[J]. 中国物理B, 2010, 19(8): 86103-086103.

Zhang Tao(张涛), Gu Yuan-Xin(古元新), Zheng Chao-De(郑朝德), and Fan Hai-Fu(范海福). OASIS4.0—a new version of the program OASIS for phasing protein diffraction data[J]. Chin. Phys. B, 2010, 19(8): 86103-086103.

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OASIS4.0—a new version of the program OASIS for phasing protein diffraction data

OASIS4.0—a new version of the program OASIS for phasing protein diffraction data

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