[1] Edelman G M 1973 Science 180 830 [2] Rosenberg A S 2006 AAPS J. 8 59 [3] Vidarsson G, Dekkers G and Rispens T 2014 Front. Immunol. 5 520 [4] Hatch H W, Bergonzo C, Blanco M A, Yuan G, Grudinin S, Lund M, Curtis J E, Grishaev A V, Liu Y and Shen V K 2024 J. Chem. Phys. 161 094113 [5] Dumetz A C, Chockla A M, Kaler EWand Lenhoff A M 2008 Biophys. J. 94 570 [6] Mason B D, Zhang-Van Enk J, Zhang L, Remmele R L Jr and Zhang J 2010 Biophys. J. 99 3792 [7] Yan Z S, Ma Y Q and Ding H M 2024 J. Chem. Phys. 160 064907 [8] Ren C L, Shan Y, Zhang P, Ding H M and Ma Y Q 2022 Sci. Adv. 8 eabo7885 [9] Pantuso E, Mastropietro T F, Briuglia M L, Gerard C J J, Curcio E, Ter Horst J H, Nicoletta F P and Di Profio G 2020 Sci. Rep. 10 8902 [10] Larson N R,Wei Y, Cruz T A, Esfandiary R, Kalonia C K, Forrest M L and Middaugh C R 2023 J. Pharm. Sci. 112 680 [11] Likhtman A E 2005 Macromolecules 38 6128 [12] Nikoubashman A and Howard M P 2017 Macromolecules 50 8279 [13] Demeule B, Lawrence M J, Drake A F, Gurny R and Arvinte T 2007 Biochim. Biophys. Acta 1774 146 [14] Dorsaz N, Thurston G M, Stradner A, Schurtenberger P and Foffi G 2011 Soft Matter 7 1763 [15] Sibanda N, Shanmugam R K and Curtis R 2023 Mol. Pharm. 20 2662 [16] Herling T W, Invernizzi G, Ausserwöger H, Bjelke J R, Egebjerg T, Lund S, Lorenzen N and Knowles T P J 2023 Proc. Natl. Acad. Sci. USA 120 e2306700120 [17] Ausserwöger H, Krainer G, Welsh T J, Thorsteinson N, De Csilléry E, Sneideris T, Schneider M M, Egebjerg T, Invernizzi G, Herling T W, Lorenzen N and Knowles T P J 2023 Proc. Natl. Acad. Sci. USA 120 e2210332120 [18] Chen S, Lau H, Brodsky Y, Kleemann G R and Latypov R F 2010 Protein Sci. 19 1191 [19] Nishi H, Miyajima M, Nakagami H, Noda M, Uchiyama S and Fukui K 2010 Pharm. Res. 27 1348 [20] Ahamed T, Esteban B N A, Ottens M, Van Dedem G W K, Van Der Wielen L A M, Bisschops M A T, Lee A, Pham C and Thömmes J 2007 Biophys. J. 93 610 [21] Mason B D, Zhang L, Remmele R L Jr and Zhang J 2011 J. Pharm. Sci. 100 4587 [22] Nishi H, Miyajima M,Wakiyama N, Kubota K, Hasegawa J, Uchiyama S and Fukui K 2011 J. Biosci. Bioeng. 112 326 [23] Trilisky E, Gillespie R, Osslund T D and Vunnum S 2011 Biotechnol. Prog. 27 1054 [24] Wang Y, Lomakin A, Latypov R F, Laubach J P, Hideshima T, Richardson P G, Munshi N C, Anderson K C and Benedek G B 2013 J. Chem. Phys. 139 121904 [25] Zheng Y, Li Q, Freiberger M I, Song H, Hu G, Zhang M, Gu R and Li J 2024 J. Chem. Inf. Model. 64 6768 [26] Janc T, Korb J P, Lukšič M, Vlachy V, Bryant R G, Mériguet G, Malikova N and Rollet A L 2021 J. Phys. Chem. B 125 8673 [27] Rao V S, Srinivas K, Sujini G N and Kumar G N S 2014 J. Proteomics 2014 147648 [28] Jones S and Thornton J M 1996 Proc. Natl. Acad. Sci. USA 93 13 [29] Nooren I M A and Thornton J M 2003 Embo J. 22 3486 [30] Thompson R W Jr, Latypov R F, Wang Y, Lomakin A, Meyer J A, Vunnum S and Benedek G B 2016 J. Chem. Phys. 145 185101 [31] Zhang F, Skoda M W A, Jacobs R M J, Martin R A, Martin C M and Schreiber F 2007 J. Phys. Chem. B 111 251 [32] Antosiewicz J, Mccammon J A and Gilson M K 1994 J. Mol. Biol. 238 415 [33] Voth G A 2017 Acc. Chem. Res. 50 594 [34] Heyman B 2003 Immunol. Lett. 88 157 [35] Brandt J P, Patapoff T W and Aragon S R 2010 Biophys. J. 99 905 [36] Chaudhri A, Zarraga I E, Kamerzell T J, Brandt J P, Patapoff TW, Shire S J and Voth G A 2012 J. Phys. Chem. B 116 8045 [37] Davies D R and Cohen G H 1996 Proc. Natl. Acad. Sci. USA 93 7 [38] Wilson I A and Stanfield R L 1994 Curr. Opin. Struct. Biol. 4 857 [39] Abhinandan K R and Martin A C R 2008 Mol. Immunol. 45 3832 [40] Chothia C, Lesk A M, Tramontano A, Levitt M, Smith-Gill S J, Air G, Sheriff S, Padlan E A, Davies D, Tulip W R, Colman P M, Spinelli S, Alzari P M and Poljak R J 1989 Nature 342 877 [41] Sivasubramanian A, Sircar A, Chaudhury S and Gray J J 2009 Proteins 74 497 [42] Oganesyan V, Damschroder M M, Leach W, Wu H and Dallácqua W F 2008 Mol. Immunol. 45 1872 [43] Oganesyan V, Damschroder M M, Woods R M, Cook K E, Wu H and Dallácqua W F 2009 Mol. Immunol. 46 1750 [44] Hirschmann F, Lopez H, Roosen-Runge F, Seydel T, Schreiber F and Oettel M 2018 J. Chem. Phys. 148 084112 [45] Harris J M, Martin N E and ModiM2001 Clin. Pharmacokinet. 40 539 [46] Brzezinski M, Argudo P G, Scheidt T, Yu M, Lemke E A, Michels J J and Parekh S H 2023 bioRxiv 570970 [47] Chudoba R, Heyda J and Dzubiella J 2017 J. Chem. Theory Comput. 13 6317 [48] Wang Y, Latypov R F, Lomakin A, Meyer J A, Kerwin B A, Vunnum S and Benedek G B 2014 Mol. Pharm. 11 1391 [49] Fetahaj Z, Jaworek M W, Oliva R and Winter R 2022 Chem. Eur. J. 28 e202201658 [50] Cruz R D C, Martins R J, Cardoso M J E D M and Barcia O E 2009 J. Solut. Chem. 38 957 [51] Silmore K S, Howard M P and Panagiotopoulos A Z 2017 Mol. Phys. 115 320 [52] Dignon G L, Zheng W, Kim Y C, Best R B and Mittal J 2018 PLoS Comput. Biol. 14 e1005941 [53] Thompson A P, Aktulga H M, Berger R, Bolintineanu D S, Brown W M, Crozier P S, Veld P J, Kohlmeyer A, Moore S G, Nguyen T D, Shan R, Stevens M J, Tranchida J, Trott C and Plimpton S J 2022 Comput. Phys. Commun. 271 108171 [54] Wang H, Kelley F M, Milovanovic D, Schuster B S and Shi Z 2021 Biophys. Rep. 1 100011 [55] Alshareedah I, Thurston G M and Banerjee P R 2021 Biophys. J. 120 1161 [56] Kirkwood J G and Buff F P 1949 J. Chem. Phys. 17 338 [57] Lee H, De Vries A H, Marrink S J and Pastor R W 2009 J. Phys. Chem. B 113 13186 [58] Humbert M T, Zhang Y and Maginn E J 2019 J. Chem. Inf. Model. 59 1301 [59] Tejedor A R, Collepardo-Guevara R, Ramírez J and Espinosa J R 2023 J. Phys. Chem. B 127 4441 [60] Ramírez J, Sukumaran S K, Vorselaars B and Likhtman A E 2010 J. Chem. Phys. 133 154103 [61] Boudara V a H, Read D J and Ramírez J 2020 J. Rheol. 64 709 [62] Sundaravadivelu Devarajan D, Wang J, Szała-Mendyk B, Rekhi S, Nikoubashman A, Kim Y C and Mittal J 2024 Nat. Commun. 15 1912 [63] Kastelic M and Vlachy V 2018 J. Phys. Chem. B 122 5400 [64] Sagawa T, Oda M, Morii H, Takizawa H, Kozono H and Azuma T 2005 Mol. Immunol. 42 9 [65] Raut A S and Kalonia D S 2016 Mol. Pharm. 13 774 [66] Sun G, Wang Y, Lomakin A, Benedek G B, Stanley H E, Xu L and Buldyrev S V 2016 J. Chem. Phys. 145 194901 [67] Yang L, Biswas M E and Chen P 2003 Biophys. J. 84 509 [68] Widom B 1965 J. Chem. Phys. 43 3892 [69] Williamson A R 1976 Annu. Rev. Biochem. 45 467 [70] Henderson R, Watts B E, Ergin H N, Anasti K, Parks R, Xia S M, Trama A, Liao H X, Saunders K O, Bonsignori M,Wiehe K, Haynes B F and Alam S M 2019 Nat. Commun. 10 654 [71] Annunziata O, Asherie N, Lomakin A, Pande J, Ogun O and Benedek G B 2002 Proc. Natl. Acad. Sci. USA 99 14165 [72] Wang Y and Annunziata O 2007 J. Phys. Chem. B 111 1222 [73] Arakawa T and Timasheff S N 1985 Biochemistry 24 6756 [74] Bhat R and Timasheff S N 1992 Protein Sci. 1 1133 [75] Nobeyama T, Furuki T and Shiraki K 2023 Langmuir 39 17043 |