† Corresponding author. E-mail:
Project supported by the National Key R&D Program of China (Grant No. 2018YFF0301005), the National Natural Science Foundation of China (Grant Nos. 71673161 and 71790613), and the Collaborative Innovation Center of Public Safety, China.
Human settlements are embedded in traffic networks with hierarchical structures. In order to understand the spreading mechanism of infectious diseases and deploy control measures, the susceptible-infected-removed spreading process is studied with agents moving globally on the hierarchical geographic network, taking into account agents’ preference for node layers and memory of initial nodes. We investigate the spreading behavior in the case of global infection under different scenarios, including different directions of human flow, different locations of infection source, and different moving behaviors of agents between layers. Based on the above-mentioned analysis, we propose screening strategies based on layer rank and moving distance, and compare their effects on delaying epidemic spreading. We find that in the case of global infection, infection spreads faster in high layers than in low layers, and early infection in high layers and moving to high layers both accelerate epidemic spreading. Travels of high-layer and low-layer residents have different effects on accelerating epidemic spreading, and moving between high and low layers increases the peak value of new infected cases more than moving in the same layer or between adjacent layers. Infection in intermediate nodes enhances the effects of moving of low-layer residents more than the moving of high-layer residents on accelerating epidemic spreading. For screening measures, improving the success rate is more effective on delaying epidemic spreading than expanding the screening range. With the same number of moves screened, screening moves into or out of high-layer nodes combined with screening moves between subnetworks has better results than only screening moves into or out of high-layer nodes, and screening long-distance moves has the worst results when the screening range is small, but it achieves the best results in reducing the peak value of new infected cases when the screening range is large enough. This study probes into the spreading process and control measures under different scenarios on the hierarchical geographical network, and is of great significance for epidemic control in the real world.
Epidemic spreading has been a global issue owing to fast development of transportation systems. Establishing more realistic epidemic spreading models is of great significance for understanding the mechanism of the spreading process and taking appropriate control measures. Traditional compartment models such as the susceptible-infected-removed (SIR) and susceptible-infected-susceptible (SIS) models[1] assume random and homogeneous mixing of population, and each member in a compartment is treated similarly and indistinguishably from the others in the same compartment, ignoring the contact structure of individuals. Network models[2–5] can grasp contact structures among people and have been a major approach to study epidemic spreading via human contacts, e.g., severe acute respiratory syndrome and influenza. However, contact structure varies when human moves between settlements, and network models neglect the diffusion of human. Therefore, metapopulation network models[6–8] are proposed where nodes represent subpopulations such as countries, cities and districts within a city, or even shopping malls, schools and homes, and links between the nodes represent traffic routes between subpopulations. The metapopulation models assume random and homogeneous mixing within subpopulations and human can diffuse along the links. Metapopulation network models are widely used in epidemic spreading with human moving, especially large-scale spatial spreading of epidemic through civil aviation and railway networks.[9–13]
In recent years, structure of metapopulation networks has been a hot spot due to its significant influence on human moving and epidemic spreading. Researchers have shown that degree heterogeneity of metapopulation network could sustain the reaction activity in the limit of vanishing density of particles, suppressing the critical point in density-driven phase transitions,[14] and strong heterogeneity would lead to high degree of predictability for globally spreading epidemics.[15] Modularity and assortativity, i.e., rich-club property, also have deep impact on the spreading velocity and outbreak size.[16,17] In addition, influence of more complicated structures is studied. In multiscale mobility networks, compared with long-range airline traffics, short-scale commuting flows were found to contribute little to global spreading of epidemics.[18] By analyzing the data regarding epidemic of measles and pertussis in Iceland during 1888–1990, Watts et al. found that the distribution of outbreak size is not bimodal as it is generally believed, but rather flat, and the new cases are resurgent throughout an outbreak of the epidemic. Different from previous human moving models that were restricted to mixing on two scales, which were called “local” and “global”, Watts et al. considered the traffic network as multi-layered and human moving as multi-scaled, and established a hierarchical metapopulation model which could well explain the extreme size variation and temporal heterogeneity.[19] To mimic multiscale mobility behaviors and the organization of traffic systems embedded in realistic geography, Han et al.[20] proposed a hierarchical geographic network model, upon which a random walker generated a power-law-like travel displacement distribution with tunable exponents, in accordance with empirical observations reported by Brockmann et al.[21] Also, Zhao et al.[22] found a hierarchical structure contributed to the resurgent and multiscale behavior of epidemics, implying high unpredictability of epidemic spreading. Moreover, Han et al.[23] studied epidemic spreading on hierarchical geographical networks with randomly walking agents, clarifying the relation between epidemic peak timing and pertinent demographic factors and providing a quantitative discussion of the efficiency of a border screening procedure focused on delaying epidemic outbreaks by reducing long-range travels.
Apart from the metapopulation network structure, human behavior is also an important factor to consider in epidemic spreading. More and more studies have shown that the timing of many human activities, ranging from communication to entertainment and work patterns, follow non-Poisson statistics, characterized by bursts of rapidly occurring events separated by long time of inactivity, rather than Poisson distribution assuming that human actions are randomly distributed in time.[24–26] Non-Poisson nature of the contact dynamics results in slowing down of the spreading and prevalence decay time significantly larger than that predicted by the standard Poisson process based models,[27,28] which mainly stems from weight-topology correlation and the burst activity pattern of individuals.[29] Human moving trajectories also exhibit non-Poisson characteristics. Brockman et al.[21] analyzed the disposal of bank notes in the United States and extracted the scaling laws of human travel, i.e., the human travel distance r and the rest time tw between displacements obey the heavy-tailed distribution p(r)∼ r−(1 + b) and
In view of the above analysis, this paper establishes an epidemic spreading model with agents moving globally with layer preference and memory of initial nodes on a hierarchical geographical network. We first investigate on human moving and epidemic spreading under different scenarios, including different directions of human flow, locations of infection source, and moving behaviors between agents in each layer. Based on the analysis, we propose mitigation strategies respectively focusing on high-layer nodes and long-distance moves, and compare their effects on delaying epidemic spreading.
The epidemic spreading model in this paper consists of three sub-models: network model, human mobility model, and local infection model.
We use the form of hierarchical geographical network model reported in Ref. [20] to describe the transportation system in the real world. There are H layers with N1 nodes in the first layer and node number expansion rate q between layers h and h − 1, thus the number of nodes in layer h is
The total number of agents in the system is M = A × N, where A is the average number of agents in a node. Each agent i is assigned to an initial node n, corresponding to its permanent residence in the real world, and agent i is called a resident of its initial node n. Probability of i assigned to n is proportional to
We consider that agents move globally with preference for layers and memory of initial nodes. A highly developed traffic system enables human to arrive in any corner of the world in one day, thus in the model, agents can visit any node in the network in a time step, which is different from most metapopulation network models where agents can only visit neighbor nodes of their current nodes in a time step. Human moving process is modeled as follows.
(i)
(ii)
(iii)
Local infection process is described by the SIR model. At each time step, each agent contacts with k other agents in the same node. In addition, each agent that moves at the time step additionally contacts with k other agents in each intermediate node it passed between the origin node and the destination node during the move. When a susceptible agent contacts with an infected agent, the susceptible one gets infected with probability pSI if the contact occurs neither in the intermediate nodes of the infected agent nor in the intermediate nodes of the susceptible agent, or with probability r × pSI otherwise. At the same time, infected agents are removed with probability pIR at each time step.
At the first time step, agents are all susceptible and located in their initial nodes. In order to make the population distribution stable in each layer, we let agents move under the model rules for 1000 time steps before the infection is introduced. We set the initial infection in layer hinit by randomly choosing an agent in hinit as the initial infector, i.e., infection source. We fix the model parameters as default parameter settings in all the following discussions, unless a given parameter value is differently specified: the network parameters S = 100, H = 4, N1 = 6, q = 6, thus N = 1554; the human moving parameters A = 100, M = 155400, ω = 0.5, ptravel = 0.005, preturn = 0.8, μ = 0, β = α = 0.6 and Tmax = 365; and the infection parameters k = 5, pSI = 0.06, pIR = 0.1, r = 0 and hinit = 1.
According to Ref. [21], the Euclidean distance of human moving obeys power-law distribution p(r) ∼ r−(1 + b), which can also be generated in our model. Figure
Spreading velocity and propagation scale are two important concerns in epidemic spreading dynamics. In the SIR model, the spreading velocity is often measured by the peak timing of new infected cases, and the propagation scale is measured by the proportion of the removed agents at the end of the infection, i.e., at the time when there are no infected agents left. However, propagation scale is not appropriate to measure the spreading risk, due to the different spreading behaviors, including surging or ultra-slow increase of the infected agents, and rapid extinction or ultra-slow decrease of them. For example, slowly increasing the number of infected agents with long time scale leads to large propagation scale, but the risk is low due to the sufficient time to deploy mitigation measures. Therefore, more attention should be paid to the spreading velocity in the case-growing phase of the spreading process. The peak timing of new infected cases is also not enough to measure the spreading velocity, because it only expresses the time it takes for an infection to reach its maximum value of new infected cases, i.e., the peak value, and the peak value is also an important index of the spreading velocity. In this study we focus on large-scale spreading of epidemics, i.e., global spreading, in which infected nodes exist in every subnetwork. In this case, the peak value and peak timing of new cases, respectively represented as C(τ) and τ, are used to measure the velocity of the spreading, with larger C(τ) and smaller τ corresponding to larger spreading velocity.
We first investigate the influence of hinit and μ on the spreading velocity in each layer. Figures
To represent the differences of travel frequency between residents of each layer, we first set the average travel probability of all the agents as ptravel, thus the average number of agents travelling from their initial nodes at each time step is Minit (t) × ptravel, where Minit (t) is the total number of agents that are in their initial nodes at time t. Next, we consider that the number of travelling agents of layer h is proportional to hλ at each time step, where λ governs the degree of the difference in the number of agents travelling from each layer. Thus the number of agents travelling from layer h is
Figure
Figure
To study the influence of the difference of preference for layers between residents of each layer on epidemic spreading, we first set λ = 0 to ensure that the number of agents moving from each layer is the same at each time step. We consider that residents of layer h has the same layer preference coefficient μh, and the layer preference coefficients of all layers are considered as an arithmetic progression, with the average value
Figures
Figure
Border screening is a common strategy to prevent epidemics from spreading to other discrete settlements.[39,40] However, effectiveness of border screening is still controversial. For example, confronted with the bursts of severe acute respiratory syndrome (SARS), Chinese government implemented entry screening policy which turned out to be very effective in preventing SARS from spreading to more cities. However, some research on travel restriction stated that travel restriction is highly ineffective in containing epidemics.[10] In this paper, we propose two kinds of screening strategies respectively aiming at moves into or out of high-layer nodes, and moves of long distance.
As we know from the analysis above, moving to high-layer nodes is more conducive to reducing τ, and moving between high-layer and low-layer nodes is more conducive to increasing C(τ). Thus, strategy I is to weaken the spreading by shutting down high-layer nodes, i.e., preventing agents from moving into or out of high-layer nodes. On the other hand, global moves increase the contact range of agents and reduce the proportion of repeated contact between agents from different nodes, thus facilitates the spreading. Hence, to achieve better effects, preventing moves into or out of high-layer nodes should be together with preventing global moves, which is strategy II.
In order to ensure the feasibility, for strategy I we choose nodes in the top two layers to implement move screening in sequence from 1st-layer nodes to 2nd-layer nodes, and nodes are chosen randomly in the same layer. As N1 = 6 and q = 6, the maximum number of target nodes is N1 +N2 = 42 and Ns = 6 represents move screening for 1st-layer nodes. For strategy II, moves between subnetworks are also screened besides move screening for high-layer nodes. In addition, the probability that a chosen move is successfully screened is set as ps = 0.8, which serves as the measure of success rate of the screening strategy. If a move is successfully screened when the agent is returning, then the return probability of the agent is 1 before the agent arrives in his initial node, representing that the trip out of the initial node is finished. Once the agent arrives in the initial node, his return probability is 0.8 again.
Figure
At the same time, we investigate on the screening strategy focusing on moves of long distance, which is strategy III. Here we set the distance threshold dc, and moves with distance that is larger than dc at the time step will be screened with ps. Figure
In the real world, Ms is an important factor to consider, and our goal is to minimize the value of Ms, at the same time meet the effects of delaying epidemic spreading. Expanding the screening range, i.e., increasing the number of target high-layer nodes for strategy I and strategy II, or reducing the value of dc for strategy III, and increasing the success rate ps, both can enhance the effects of delaying spreading, at the same time increase Ms. Thus, we discuss which method can achieve better results with the same Ms. Figure
According to Fig.
Figures
Strategy III has the worst effects when Ms is small. This is because for strategy III, small Ms corresponds to large dc, which means that moves of extremely long distance will be screened. In this case, moves between low-layer nodes account for a large proportion of the moves screened due to the long distance between them, which contribute less to the spreading velocity than moves into or out of high-layer nodes. As Ms increases, strategy III can screen global moves, even moves between high-layer and low-layer nodes within a subnetwork. At the same time, strategy III limits the moves of agents within the range of dc, thus reduces the number of nodes whose agents can contact with each other. In contrast, strategy I does not reduce the move range of agents, and strategy II only limits moves within each subnetwork. Therefore, when Ms increases, strategy III reduces C(τ) and increases τ more obviously than strategies I and II. When Ms is large enough, strategy III has the best effects in reducing C(τ), while strategy I has the worst effects. However, strategy III does not outperform other strategies in increasing τ, because it is less effective than strategies I and II on screening moves into or out of high-layer nodes.
The objective of this paper is to probe into the mechanism of epidemic spreading in hierarchical geographical networks under different scenarios and deploy more targeted mitigation strategies to control epidemic spreading. We build an epidemic spreading model which consists of three sub-models: hierarchical geographical network model with periodic boundary conditions, human moving model with agents’ preference for node layers and memory of initial nodes, and local infection model of SIR.
We investigate the spreading behavior of global infection under different scenarios, including different directions of human flow, different locations of infection source, and different moving behaviors of agents between each layer. We find that (1) epidemics in high layers always spread faster than in low layers regardless of the agents’ preference for layers and location of infection source. Early infection in high layers and moving to high layers both accelerate the spreading process. (2) Travel of high-layer and low-layer residents have different effects on accelerating epidemic spreading. Travel of residents of high-layer nodes is more conducive to reducing the peak timing of new infected cases. Travel of residents of low-layer nodes is more conducive to increasing the peak value of new infected cases, but only when agents tend to move to high-layer nodes, and the effects of travel of low-layer residents on increasing the peak value is weakened when agents move to low-layer nodes. Moving between high and low layers increases the peak value of new infected cases more than moving in the same layer or between adjacent layers, and it also reduces the peak timing when the infection source is in the low layers. (3) Considering that low-layer residents pass more intermediate nodes in a move than high-layer residents, the infection in the intermediate nodes enhances the effects of the move of low-layer residents on epidemic spreading more than the effects of the move of high-layer residents. In general, moving to high-layer nodes and moving between subnetworks reduce the peaking timing of new infected cases, and moving between high and low layers increases the peaking value of new infected cases. Different from the previous studies that focus on nodes in high layers and with large degree, the findings highlight the role of agents in low-layer nodes in epidemic spreading, especially when infection in the intermediate nodes is considered.
Based on the above analysis, we have proposed screening strategies to reduce the risk of infectious disease spreading from two perspectives of node layer and moving distance and compared the inhibitory effects of different strategies. It is found that (1) screening moves into or out of high-layer nodes can screen out most global moves when agents move to high layers, but it is not effective when agents move to low layers. Screening long-distance moves achieves better effects when agents tend to move to low layers than to high layers. (2) With the same number of moves screened, improving the success rate is more effective than expanding the screening range for all three screening strategies. (3) With the same number of moves screened, the three strategies have similar results in delaying epidemic spreading when agents move to high layers. Screening moves into or out of high-layer nodes combined with screening moves between subnetworks has better results than only screening moves into or out of high-layer nodes when agents move to low layers. Screening long-distance moves has the worst results when the screening range is small, but it achieves better results as the screening range increases, and it has the best results in reducing the peak value of new infected cases when the screening range is large enough. In general, when we implement screening measures, increasing the success rate of screening for high-layer nodes and long-distance moves should be a priority, followed by expanding the screening range. We should not only restrict agents from moving into or out of high-layer nodes, but also restrict agents from moving between subnetworks, and limiting the moving of agents to a relatively small range can effectively reduce the maximum number of new infected cases.
Our findings show that traffic network structure and human moving pattern both have important consequences on epidemic spreading. Preventing agents from moving to high-layer nodes, moving between subnetworks and between high and low layers is of great significance in delaying epidemic spreading. Control measures in the paper provide administrators with the best option under different scenarios.
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