(color online) Secondary structure formation of 1YRF using hyCG, SITS, and AA. All the secondary structure is determined by STRIDE in VMD.^[46] (a) The percentage of helix structure. It is determined by the helical (STRIDE code H,G,I) number divided by the total residue number. The black line indicates the correct percentage of the helix number. (b) The correctness of the secondary structure. It is determined by the percentage of the correct secondary structure compared to the native structure.