Hierarchical processes inβ-sheet peptide self-assembly from the microscopic to the mesoscopic level
Deng Li, Xu Hai†,
Free energy landscapes for IIIIKK and KIIIIK were calculated by all atomistic replica exchange molecular dynamics simulation. TheXaxis is the contact degreeg12between peptide1 and peptide2 and theYaxis is the contact degreeg23between peptide2 and peptide3, where the peptides in the trimer have been reordered.[36]